PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000137.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 173aa    MW: 17940.2 Da    PI: 8.1123
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000137.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-054365123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C + F ++  L  H++ H
  Itr_sc000137.1_g00015.1 43 FECHYCRRGFASSQALGGHQNAH 65
                             89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-64270No hitNo description
PfamPF139121.3E-54267IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5524370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSDSSSSLEE RMFIGIPVTN RGQLPPTVLR PGPAGGAGTK LRFECHYCRR GFASSQALGG  60
HQNAHKRERQ RAKLAQLSAA AAAGEHRLAA PTLSRPPLFS VLDGVSAWNP QMCSVVPLGY  120
PVGSGGAGFH VGGSPVAVTA DFQASDDGPE NFATSSEVEG GVGIDLHLRL APP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.14e-11C2H2 family protein